![[Nurasaki Project]](image/murasaki.png "[Murasaki Project]")
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Murasaki Project - the Frontpage?
| ./murasaki seq/MtC.gbk seq/Mle.gbk -p[28:36] -H2 -b24 --name myalignment | Runs the core alignment program. "seq/MtC.gbk seq/Mle.gbk" specifies the input sequences. "-p[28:36]" uses a random string consiting of 28 1's and 8 0's. -H2 specifies to include anchor component information (for calculation of tf-idf scores by filter.pl). -b24 specifies to use only 24bit hash keys (as opposed to the default 26). This is desriable (possibly necessary) for machines with limited RAM. --name obviously the output file prefix. |
