GMV

GMV is a comparative genome browser for Murasaki. GMV visualizes anchors from Murasaki, annotation data from GenBank files, and expression / prediction score from GFF files.

GMV works on any platform which has GTK+-2.x. Currently, MacOS X, FreeBSD and Linux are supported. Also, experimental build for Microsoft Windows is available.

News

Download GMV

License

GMV is provided under Beerware License. However, binary package for MacOS X is distributed under the GNU General Public License (GPL), since MacOS X package (gmv.app) is based on Platypus. Sample data contains genome sequences from NCBI.

Download GMV

Binary downloads are available for MacOS X and Windows. Source tarball is available for other platforms.

Source tarball

Stable ReleaseLatest Snapshot
Sourcegmv.tar.gz
Jun.28, 2012 13:29:46 JST
861kB
gmv-snap.tar.gz
Jun.28, 2012 13:17:40 JST
861kB

MacOS X package

Runs on MacOS X 10.5 (Leopard) and later.

BuildStable ReleaseLatest Snapshot
Microbialgmv-m.zip
Jun.28, 2012 13:30:01 JST
1,522kB
gmv-snap-m.zip
Jun.28, 2012 13:17:55 JST
1,523kB
Largeseqgmv.zip
Jun.28, 2012 13:29:53 JST
1,565kB
gmv-snap.zip
Jun.28, 2012 13:17:46 JST
8,014kB

Windows package

Runs on Windows 2000, XP and Vista (and maybe on Windows 7).

BuildStable ReleaseLatest Snapshot
Microbialgmv-m-win.zip
Jun.28, 2012 13:30:00 JST
7,991kB
gmv-snap-m-win.zip
Jun.28, 2012 13:17:54 JST
7,993kB
Largeseqgmv-win.zip
Jun.28, 2012 13:29:52 JST
8,012kB
gmv-snap-win.zip
Jun.28, 2012 13:17:48 JST
1,565kB

Supplementals

Build GMV

Requirements

Build it!

Then unpack gmv.tar.gz and edit Gmv.conf.

$ tar xzf gmv.tar.gz
$ cd gmv
$ vi Gmv.conf

Important lines are:

CC = ccache g++-4.0
CC_WINDOWS = g++
# CFLAGS += -DUSE_GLIB_REGEX

Set CC to your C++ compiler (if you're trying to build on MinGW, set CC_WINDOWS instead.) Also, you may have to uncomment CFLAGS += -DUSE_GLIB_REGEX, if your system doesn't have regex.h (I believe most Unix based system have this, but at least, MinGW doesn't.)

Then, just type

$ make

and you'll get the binary "gmv" in current directory. Move it anywhere you like (maybe somewhere in your PATH) and launch gmv.

To get stripped (and Universal one on MacOS X) binary, type

$ make RELEASE=yes

Stripped binary will be much smaller (and maybe faster) than normal build.