GMV Samples
10 Mycoplasma + 1 Ureaplasma: All vs. All †
Download and unpack the Genome archive and at least one anchor archive. Put both of seqs/ folder (genome sequences) and outputs/ folder (anchors) in same folder. Open any ".anchors" file with GMV to see the anchors.
"X" and "YY" in filename "mpX-YY-*.anchors" mean number of genomes and name of species that are compared, respectively. For example, mp2-1A-110-7.anchors contains anchors between M. penetrans (#1 in the table below) and M. synoviae (#A in the table).
List of Genomes †
# | Specie | Strain | Genbank |
---|---|---|---|
1 | M. penetrans | HF-2 | BA000026 |
2 | M. pulmonis | UAB CTIP | AL445566 |
3 | M. pneumoniae | M129 | U00089 |
4 | M. mycoides subsp. mycoides | SC PG1 | BX293980 |
5 | M. mobile | 163K | AE017308 |
6 | M. genitalium | G37 | L43967 |
7 | M. hyopneumoniae | 232 | AE017332 |
8 | M. gallisepticum | R | AE015450 |
9 | M. capricolum subsp. capricolum | ATCC 27343 | CP000123 |
A | M. synoviae | 53 | AE017245 |
B | U. urealyticum | ATCC 700970 | NC_002162 |
- Genome archive download:
mp_genomes.zip May.10, 2007 19:52:43 JST 6,451kB
- All sequence files are from NCBI Genbank, but are renamed.
2 Genomes All vs. All: Anchors †
Download zip files separately from the table below, or download all results: mp2-all-110-7.zip
218,831kB
1 | M.penetrans | ![]() |
2 | M.pulmonis | ![]() |
3 | M.pneumoniae | ![]() |
4 | M.mycoides | ![]() |
5 | M.mobile | ![]() |
6 | M.genitalium | ![]() |
7 | M.hyopneumoniae | ![]() |
8 | M.gallisepticum | ![]() |
9 | M.capricolum | ![]() |
A | M.synoviae | ![]() |
3 Genomes All vs. All: Anchors †
Download zip files separately from the table below, or download all results: mp3-all-110-7.zip
842,445kB
1 | M.penetrans | ![]() |
2 | M.pulmonis | ![]() |
3 | M.pneumoniae | ![]() |
4 | M.mycoides | ![]() |
5 | M.mobile | ![]() |
6 | M.genitalium | ![]() |
7 | M.hyopneumoniae | ![]() |
8 | M.gallisepticum | ![]() |
9 | M.capricolum | ![]() |