GMV Samples

10 Mycoplasma + 1 Ureaplasma: All vs. All

Download and unpack the Genome archive and at least one anchor archive. Put both of seqs/ folder (genome sequences) and outputs/ folder (anchors) in same folder. Open any ".anchors" file with GMV to see the anchors.

"X" and "YY" in filename "mpX-YY-*.anchors" mean number of genomes and name of species that are compared, respectively. For example, mp2-1A-110-7.anchors contains anchors between M. penetrans (#1 in the table below) and M. synoviae (#A in the table).

List of Genomes

#SpecieStrainGenbank
1M. penetransHF-2BA000026
2M. pulmonisUAB CTIPAL445566
3M. pneumoniaeM129U00089
4M. mycoides subsp. mycoidesSC PG1BX293980
5M. mobile163KAE017308
6M. genitaliumG37L43967
7M. hyopneumoniae232AE017332
8M. gallisepticumRAE015450
9M. capricolum subsp. capricolumATCC 27343CP000123
AM. synoviae53AE017245
BU. urealyticumATCC 700970NC_002162

2 Genomes All vs. All: Anchors

Download zip files separately from the table below, or download all results: mp2-all-110-7.zip 218,831kB

1M.penetransmp2-1-110-7.zip 60,289kB
2M.pulmonismp2-2-110-7.zip 38,659kB
3M.pneumoniaemp2-3-110-7.zip 6,747kB
4M.mycoidesmp2-4-110-7.zip 46,567kB
5M.mobilemp2-5-110-7.zip 22,187kB
6M.genitaliummp2-6-110-7.zip 6,750kB
7M.hyopneumoniaemp2-7-110-7.zip 15,070kB
8M.gallisepticummp2-8-110-7.zip 8,163kB
9M.capricolummp2-9-110-7.zip 11,315kB
AM.synoviaemp2-A-110-7.zip 3,083kB

3 Genomes All vs. All: Anchors

Download zip files separately from the table below, or download all results: mp3-all-110-7.zip 842,445kB

1M.penetransmp3-1-110-7.zip 320,577kB
2M.pulmonismp3-2-110-7.zip 192,181kB
3M.pneumoniaemp3-3-110-7.zip 18,706kB
4M.mycoidesmp3-4-110-7.zip 182,453kB
5M.mobilemp3-5-110-7.zip 64,241kB
6M.genitaliummp3-6-110-7.zip 13,527kB
7M.hyopneumoniaemp3-7-110-7.zip 32,765kB
8M.gallisepticummp3-8-110-7.zip 10,515kB
9M.capricolummp3-9-110-7.zip 7,481kB