Murasaki Project: Backup of GMV(No. 15)

GMV is a comparative genome browser for Murasaki. GMV visualizes anchors from Murasaki, annotation data from GenBank files, and expression / prediction score from GFF files.

GMV works on any platform which has GTK+-2.10 or later. Currently, MacOS X, FreeBSD and Linux are supported. Also, experimental build for Microsoft Windows is available.

News †

Apr. 22: version 1e-100 released
- "Alpha by tfidf" mode is now default. In this mode, anchors with high tf-idf score is drawn in thick color.
- Many many bugs are fixed!
Apr. 10: version 1e-101 released
- Improved thumbnail bar

Note that version number is in exponential form, and it's still far from its first production release (1.0)!

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Download GMV †

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License †

GMV is provided under Beerware License. However, binary package for MacOS X is distributed under the GNU General Public License (GPL), since MacOS X package (gmv.app) is based on Platypus. Sample data contains genome sequences from NCBI.

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Download GMV †

Binary downloads are available for MacOS X (10.4 / 10.5) and Windows (2000 and later). Source tarball is available for other platforms.

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Microbial builds †

Lower RAM requirement, but length of each sequence is limited up to 2Gbp. Suitable for most microbial genome analysis.

Platform	Stable Release	Latest Snapshot
MacOS X	gmv-m.zip Jun.28, 2012 13:30:01 JST 1,522kB	gmv-snap-m.zip Jun.28, 2012 13:17:55 JST 1,523kB
Windows	gmv-m.exe Oct.03, 2009 15:35:43 JST 2,370kB	gmv-snap-m.exe Mar.27, 2010 18:03:04 JST 2,370kB

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Source & Normal builds †

Platform	Stable Release	Latest Snapshot
MacOS X	gmv.zip Jun.28, 2012 13:29:53 JST 1,565kB	gmv-snap.zip Jun.28, 2012 13:17:46 JST 8,014kB
Windows	gmv.exe Oct.03, 2009 15:35:42 JST 2,416kB	gmv-snap.exe Mar.27, 2010 18:03:02 JST 2,417kB
Source	gmv.tar.gz Jun.28, 2012 13:29:46 JST 861kB	gmv-snap.tar.gz Jun.28, 2012 13:17:40 JST 861kB

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Supplementals †

GTK+ package for MacOS X gtk2-2.12.9-universal.zip

Apr.07, 2008 20:32:36 JST
33,046kB
Sample data set: gmv-samples.zip May.07, 2007 18:23:27 JST 18,019kB
More samples are available in GMV Samples

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Requirements †

MacOS X (10.4 or later)
- Requirement: X11.app & Latest GTK+
- For MacOS X 10.4 users, X11.app is available in MacOS X installation DVD. For MacOS X 10.5 users, available pre-installed (but I recommend to install XQuartz to update X11.app!).
- Packaged GTK+ is available from the table above. or if you have MacPorts, you can install GTK+ by yourself.
Microsoft Windows (Windows2000, XP and maybe Vista)
- Windows binary may be unstable, sorry...
- Requirement: GTK+-2.12.3 package from GTK+ for Windows Runtime project.
  - Download GTK+ 2.12.3 package from sourceforge
  - Uninstall any other GTK+ runtime, if you have installed before.

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Build Instruction †

First, make sure you have:

GNU g++ 4.0 (other C++ compilers may work, but I'm not sure)
GTK+ 2.10 or later, which can be detected by: pkg-config --modversion gtk+-2.0
GNU make (BSD make can't build GMV) Then unpack gmv.tar.gz and edit Gmv.conf.

$ tar xzf gmv.tar.gz
$ cd gmv
$ vi Gmv.conf

Important lines are:

CC = ccache g++-4.0
CC_WINDOWS = g++

# CFLAGS += -DUSE_GLIB_REGEX

Set CC to your C++ compiler (if you're trying to build on MinGW, set CC_WINDOWS instead.) Also, you may have to uncomment CFLAGS += -DUSE_GLIB_REGEX, if your system doesn't have regex.h (I believe most Unix based system have this, but at least, MinGW doesn't.)

Then, just type

$ make

and you'll get the binary "gmv" in current directory. Move it anywhere you like (maybe somewhere in your PATH) and launch gmv.

To get stripped (and Universal one on MacOS X) binary, type

$ make RELEASE=yes

Stripped binary will be much smaller (and maybe faster) than normal build.