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GMV is a comparative genome browser for Murasaki. GMV visualizes anchors from Murasaki, annotation data from GenBank files, and expression / prediction score from GFF files.

GMV works on any platform which has GTK+-2.10 or later. Currently, MacOS X, FreeBSD and Linux are supported. Also, experimental build for Microsoft Windows is available.

News †

• Oct.03, 2009
  • New GMV release (1e-94) has been released.
  • tmurasakix support.
• Mar.03, 2009
  • New GMV release (1e-95) has been released.
  • For MacOS X users, new GTK+ package is required. X11.app is no longer required.
• Feb.24, 2009
  • New GMV snapshot is finally available!!
  • For MacOS X users, new GTK+ package is required. This snapshot with the new GTK package don't require X11.app to run.
• Aug.30, 2008
  • New GMV snapshot available.
  • MacOS X binary update: Please update your GTK+ installation! (latest binary package available here is Aug.2008 version)
• Jul.09, 2008
  • GMV is now capable to show "Rifts", detected by Murasaki 1.33 and later.

GMV's version number is in exponential form, so I expect 90+ updates before its first production release (1.0)... Maybe 2 or more years.

Download GMV †

License †

GMV is provided under Beerware License. However, binary package for MacOS X is distributed under the GNU General Public License (GPL), since MacOS X package (gmv.app) is based on Platypus. Sample data contains genome sequences from NCBI.

Download GMV †

Binary downloads are available for MacOS X (10.4 / 10.5) and Windows (2000 and later). Source tarball is available for other platforms.

Source tarball †

	Stable Release	Latest Snapshot
Source	gmv.tar.gz Jun.28, 2012 13:29:46 JST 861kB	gmv-snap.tar.gz Jun.28, 2012 13:17:40 JST 861kB

MacOS X package †

Runs on MacOS X 10.4 (Tiger) and later, including 10.6 (Snow Leopard).

Build	Stable Release	Latest Snapshot
Microbial	gmv-m.zip Jun.28, 2012 13:30:01 JST 1,522kB	gmv-snap-m.zip Jun.28, 2012 13:17:55 JST 1,523kB
Largeseq	gmv.zip Jun.28, 2012 13:29:53 JST 1,565kB	gmv-snap.zip Jun.28, 2012 13:17:46 JST 8,014kB

• GTK+-Quartz package for MacOS X GTK+-2.14.7.zip Feb.24, 2009 20:13:49 JST 59,379kB is required.
• Largeseq build supports 2Gbp+ sequences such as Human genome, and Microbial build has smaller RAM footprint.

Windows package †

Runs on Windows 2000, XP and Vista (and maybe on Windows 7).

Build	Stable Release	Latest Snapshot
Microbial	gmv-m.exe Oct.03, 2009 15:35:43 JST 2,370kB	gmv-snap-m.exe Mar.27, 2010 18:03:04 JST 2,370kB
Largeseq	gmv.exe Oct.03, 2009 15:35:42 JST 2,416kB	gmv-snap.exe Mar.27, 2010 18:03:02 JST 2,417kB

• GTK+ package for Windows from GTK+ for Windows Runtime project is required.
• Largeseq build supports 2Gbp+ sequences such as Human genome, and Microbial build has smaller RAM footprint.

Supplementals †

• Sample data set: gmv-samples.zip May.07, 2007 18:23:27 JST 18,019kB
  • More samples are available in GMV Samples
• If you're sticking older GMV for Mac (before Dec.2008), you may need older GTK+ package for MacOS X gtk2-2.12.9-Aug2008.zip Aug.30, 2008 20:01:21 JST 52,605kB

Build GMV †

Requirements †

• Supported Platforms
  • MacOS X
  • FreeBSD
  • Linux (maybe...) with sufficient version of GTK+.
  • Win32 with Cygwin or MinGW/MSYS (and any cross compiling environments with MiNGW libraries)
• Dependencies:
  • GNU g++ 4.0 (other C++ compilers may work, but I'm not sure)
  • GTK+ 2.10 or later, which can be detected by: pkg-config --modversion gtk+-2.0
    • If you're going to compile with GTK+-Quartz, I recommend 2.14.7.
  • GNU make (BSD make can't build GMV)

Build it! †

Then unpack gmv.tar.gz and edit Gmv.conf.

$ tar xzf gmv.tar.gz
$ cd gmv
$ vi Gmv.conf

Important lines are:

CC = ccache g++-4.0
CC_WINDOWS = g++

# CFLAGS += -DUSE_GLIB_REGEX

Set CC to your C++ compiler (if you're trying to build on MinGW, set CC_WINDOWS instead.) Also, you may have to uncomment CFLAGS += -DUSE_GLIB_REGEX, if your system doesn't have regex.h (I believe most Unix based system have this, but at least, MinGW doesn't.)

Then, just type

$ make

and you'll get the binary "gmv" in current directory. Move it anywhere you like (maybe somewhere in your PATH) and launch gmv.

To get stripped (and Universal one on MacOS X) binary, type

$ make RELEASE=yes

Stripped binary will be much smaller (and maybe faster) than normal build.